STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4818KEGG: hypothetical protein. (71 aa)    
Predicted Functional Partners:
Bccel_4816
KEGG: ParB domain-containing protein nuclease; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease.
 
     0.622
Bccel_2994
Helix-turn-helix domain protein; KEGG: XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.596
Bccel_4185
Hypothetical protein; KEGG: ABC transporter permease.
  
     0.514
Bccel_4815
KEGG: SNF2 family protein; PFAM: SNF2-related protein, helicase domain-containing protein; SMART: DEAD-like helicase, helicase domain-containing protein.
       0.511
Bccel_4817
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cobyrinic acid a,c-diamide synthase.
       0.511
Bccel_3047
KEGG: S-layer protein; PFAM: S-layer domain-containing protein; SMART: PKD/Chitinase domain-containing protein.
  
     0.495
Bccel_4814
PFAM: Domain of unknown function DUF3991; KEGG: zinc finger CHC2-family protein.
       0.479
Bccel_0984
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: hypothetical protein.
  
     0.443
Bccel_4313
KEGG: hypothetical protein.
  
     0.434
Bccel_3008
Putative transcriptional regulator, GntR family; KEGG: hypothetical protein.
  
     0.420
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.