Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4841KEGG: hypothetical protein. (218 aa)    
Predicted Functional Partners:
Bccel_0677
PFAM: Flagellar hook-length control protein-like protein; KEGG: hypothetical protein.
  
     0.774
Bccel_4416
PFAM: Colicin V production protein; KEGG: putative membrane protein, required for colicin V production.
  
     0.768
Bccel_3904
KEGG: flagellar biosynthesis anti-sigma factor FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor protein FlgM; PFAM: Anti-sigma-28 factor FlgM family protein.
  
     0.757
Bccel_1940
Transcriptional regulator, MerR family; SMART: regulatory protein MerR; KEGG: regulatory protein MerR.
  
     0.756
Bccel_2452
PFAM: S-layer domain-containing protein; KEGG: S-layer protein.
  
     0.751
Bccel_4999
KEGG: protein possibly involved in post-translational modification of quorum-sensing peptides; PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B.
  
     0.741
Bccel_2432
PFAM: protein of unknown function DUF327; KEGG: hypothetical protein.
  
     0.723
Bccel_1937
KEGG: hypothetical protein.
  
     0.694
Bccel_5645
PFAM: S-layer domain-containing protein; KEGG: hypothetical protein.
  
     0.679
Bccel_3801
PFAM: Domain of unknown function DUF4098; KEGG: hypothetical protein.
  
     0.673
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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