Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_4902KEGG: transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (65 aa)    
Predicted Functional Partners:
Bccel_4903
KEGG: hypothetical protein.
       0.781
rlmH
Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.461
Bccel_4905
Beta-lactamase domain protein; KEGG: beta-lactamase superfamily metal-dependent hydrolase; PFAM: beta-lactamase domain protein; SMART: beta-lactamase domain protein.
       0.461
Bccel_2000
KEGG: peptidase S41; PFAM: peptidase S41, Tetratricopeptide TPR_1 repeat-containing protein; SMART: peptidase S41, Tetratricopeptide repeat-containing protein.
    
  0.432
Bccel_3688
TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain-containing protein; KEGG: molybdenum cofactor biosynthesis protein; SMART: molybdopterin binding domain-containing protein.
     
  0.425
Bccel_1137
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: hypothetical protein.
    
  0.417
Bccel_1175
PFAM: Tetratricopeptide repeat-containing protein; KEGG: hypothetical protein.
    
  0.417
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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