Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_4929PFAM: lipopolysaccharide biosynthesis protein; KEGG: lipopolysaccharide biosynthesis protein. (305 aa)    
Predicted Functional Partners:
Bccel_0824
TIGRFAM: capsular exopolysaccharide family; KEGG: capsular exopolysaccharide family protein; PFAM: AAA domain.
  
 0.862
Bccel_1855
TIGRFAM: capsular exopolysaccharide family; KEGG: capsular exopolysaccharide family protein; PFAM: AAA domain.
  
 0.862
Bccel_4930
PFAM: O-antigen polymerase; KEGG: O-antigen polymerase.
       0.745
Bccel_1867
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.711
Bccel_0825
Protein-tyrosine-phosphatase; KEGG: capsular polysaccharide biosynthesis protein; PFAM: PHP domain protein.
  
 
 0.702
Bccel_1870
KEGG: protein-tyrosine-phosphatase; PFAM: PHP domain protein.
  
 
 0.702
Bccel_4927
Glucose-1-phosphate thymidylyltransferase; KEGG: nucleotidyltransferase; PFAM: Nucleotidyl transferase.
     
 0.692
Bccel_1868
TIGRFAM: capsular exopolysaccharide family; KEGG: lipopolysaccharide biosynthesis protein; PFAM: AAA domain, lipopolysaccharide biosynthesis protein.
  
 0.690
Bccel_4928
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
     
 0.677
Bccel_1235
ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 0.666
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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