STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4930PFAM: O-antigen polymerase; KEGG: O-antigen polymerase. (1004 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.
    
  0.787
Bccel_2299
PFAM: Peptidase M23; KEGG: peptidase M23B.
   
 
 0.755
Bccel_2451
PFAM: S-layer domain-containing protein; KEGG: S-layer protein.
  
     0.751
Bccel_2000
KEGG: peptidase S41; PFAM: peptidase S41, Tetratricopeptide TPR_1 repeat-containing protein; SMART: peptidase S41, Tetratricopeptide repeat-containing protein.
 
  
 0.749
Bccel_4929
PFAM: lipopolysaccharide biosynthesis protein; KEGG: lipopolysaccharide biosynthesis protein.
       0.745
Bccel_2661
KEGG: hypothetical protein.
  
     0.732
Bccel_1941
PFAM: copper amine oxidase-like domain-containing protein; KEGG: copper amine oxidase family protein.
  
     0.719
Bccel_0056
KEGG: hypothetical protein.
  
     0.715
Bccel_5031
PFAM: S-layer domain-containing protein; KEGG: putative S-layer protein.
  
  
  0.702
Bccel_0928
PFAM: copper amine oxidase-like domain-containing protein, peptidase domain protein; KEGG: copper amine oxidase-like domain-containing protein.
  
     0.679
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.