Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_4939KEGG: HYR domain-containing protein,Cellulose binding domain-containing protein. (184 aa)    
Predicted Functional Partners:
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
    
 0.598
Bccel_4491
KEGG: hypothetical protein.
    
 0.584
Bccel_1793
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, S-layer domain-containing protein; KEGG: subtilisin-like serine protease; Belongs to the peptidase S8 family.
  
 0.578
Bccel_3191
Thermitase; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, cellulosome anchoring protein cohesin region; KEGG: subtilisin-like serine protease; SMART: Hedgehog/intein hint domain-containing protein; Belongs to the peptidase S8 family.
  
 0.578
Bccel_4135
TIGRFAM: RHS repeat-associated core domain-containing protein, YD repeat protein; PFAM: Ig domain protein group 2 domain protein, YD repeat-containing protein, SH3 domain protein; KEGG: Rhs family protein; SMART: Ig domain protein group 2 domain protein, SH3 domain protein, Fibronectin type III domain protein, Hedgehog/intein hint domain-containing protein.
  
 0.578
Bccel_4472
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: subtilisin-like serine protease.
  
 0.578
Bccel_5402
Thermitase; KEGG: subtilisin-like serine protease; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, cellulosome anchoring protein cohesin region, peptidase domain protein; Belongs to the peptidase S8 family.
  
 0.578
Bccel_5515
TIGRFAM: RHS repeat-associated core domain-containing protein, YD repeat protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, regulator of chromosome condensation RCC1, Kelch repeat type 1-containing protein, YD repeat-containing protein; KEGG: RHS repeat-associated core domain-containing protein; SMART: Kelch repeat type 1-containing protein.
  
 0.578
Bccel_3047
KEGG: S-layer protein; PFAM: S-layer domain-containing protein; SMART: PKD/Chitinase domain-containing protein.
     
  0.577
Bccel_2780
FHA domain containing protein; TIGRFAM: Type VII secretion protein EssC; PFAM: cell division FtsK/SpoIIIE, Forkhead-associated protein; KEGG: FHA domain-containing protein; SMART: Forkhead-associated protein, AAA ATPase.
   
 0.559
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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