STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4953PFAM: 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: hypothetical protein. (127 aa)    
Predicted Functional Partners:
Bccel_4955
PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: NADH dehydrogenase (ubiquinone) 30 kDa subunit.
 
 0.999
Bccel_4958
NADH dehydrogenase (quinone); KEGG: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit; PFAM: NADH/Ubiquinone/plastoquinone (complex I), NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein.
 
 0.999
Bccel_4954
NADH dehydrogenase (quinone); KEGG: NADH-ubiquinone oxidoreductase chain 49kDa; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa, nickel-dependent hydrogenase large subunit; Belongs to the complex I 49 kDa subunit family.
 
 0.998
Bccel_4956
TIGRFAM: NADH-quinone oxidoreductase, B subunit; KEGG: NADH ubiquinone oxidoreductase 20 kDa subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Belongs to the complex I 20 kDa subunit family.
 
 0.998
Bccel_0982
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: NADH:ubiquinone oxidoreductase 24 kD subunit.
  
 0.997
Bccel_4957
PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: respiratory-chain NADH dehydrogenase subunit 1.
 
 0.997
Bccel_0985
Hydrogenase, Fe-only; SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein, iron hydrogenase small subunit; TIGRFAM: hydrogenase, Fe-only; KEGG: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein, iron hydrogenase small subunit, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein.
  
 0.996
Bccel_3831
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, Pyruvate/ketoisovalerate oxidoreductase, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein, Transketolase domain-containing protein, thiamine pyrophosphate TPP-binding domain-containing protein.
  
 0.996
Bccel_0986
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit, NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein, Soluble ligand binding domain-containing protein, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: respiratory-chain NADH dehydrogenase domain 51 kDa subunit; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein.
 
 0.995
Bccel_1204
KEGG: NmrA family protein.
   
 0.995
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.