Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_4956TIGRFAM: NADH-quinone oxidoreductase, B subunit; KEGG: NADH ubiquinone oxidoreductase 20 kDa subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Belongs to the complex I 20 kDa subunit family. (144 aa)    
Predicted Functional Partners:
Bccel_4954
NADH dehydrogenase (quinone); KEGG: NADH-ubiquinone oxidoreductase chain 49kDa; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa, nickel-dependent hydrogenase large subunit; Belongs to the complex I 49 kDa subunit family.
 
 0.999
Bccel_5053
PFAM: NADH-ubiquinone oxidoreductase chain 49kDa, NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: Ni,Fe-hydrogenase III large subunit.
 
 0.999
Bccel_4957
PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: respiratory-chain NADH dehydrogenase subunit 1.
 
 
 0.993
Bccel_4953
PFAM: 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: hypothetical protein.
 
 
 0.989
Bccel_5056
PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: Formate hydrogenlyase subunit 4.
 
 
 0.964
Bccel_5054
NADH dehydrogenase (quinone); KEGG: Hydrogenase-4 component F; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
 
 
 0.956
Bccel_5057
NADH dehydrogenase (quinone); KEGG: Hydrogenase-4 component B / Formate hydrogenlyase subunit 3; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
 
 
 0.950
Bccel_4958
NADH dehydrogenase (quinone); KEGG: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit; PFAM: NADH/Ubiquinone/plastoquinone (complex I), NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein.
 
  
 0.941
Bccel_4955
PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: NADH dehydrogenase (ubiquinone) 30 kDa subunit.
 
  
 0.938
Bccel_5052
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: Formate hydrogenlyase subunit 7.
  
 
 0.870
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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