Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4960PFAM: acyltransferase 3; KEGG: hypothetical protein. (345 aa)    
Predicted Functional Partners:
Bccel_3490
KEGG: glutamate synthase family protein; PFAM: ferredoxin-dependent glutamate synthase, glutamine amidotransferase class-II, glutamate synthase alpha subunit domain protein, glutamate synthase.
     
  0.774
Bccel_2664
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
  0.572
Bccel_1682
KEGG: thioester reductase; TIGRFAM: thioester reductase domain protein; PFAM: Male sterility domain-containing protein.
     
  0.563
Bccel_4961
PFAM: PTS system Galactitol-specific IIC component; KEGG: phosphotransferase system, galactitol-specific IIC component.
       0.477
Bccel_3993
TIGRFAM: cyanophycin synthetase; KEGG: cyanophycin synthetase; PFAM: Mur ligase middle domain protein, RimK domain protein ATP-grasp.
    
 0.476
Bccel_5211
TIGRFAM: cyanophycin synthetase; KEGG: MurE3, cyanophycin synthetase; PFAM: Mur ligase middle domain protein, cytoplasmic peptidoglycan synthetase domain protein; Belongs to the MurCDEF family.
    
 0.476
Bccel_0603
D-alanine--D-alanine ligase domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.446
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.446
Bccel_3705
TIGRFAM: phosphoribosylformylglycinamidine synthase; KEGG: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein, AIR synthase related protein.
    
  0.442
Bccel_5658
TIGRFAM: glutamine synthetase, type I; KEGG: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region, glutamine synthetase beta-Grasp.
     
  0.441
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.