Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_4982TIGRFAM: spore coat protein, CotS family; KEGG: CotS family spore coat protein. (330 aa)    
Predicted Functional Partners:
Bccel_3411
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: single-stranded DNA-binding protein.
  
    0.762
Bccel_2616
KEGG: beta type small acid-soluble spore protein.
  
     0.615
Bccel_3519
PFAM: Tetratricopeptide repeat-containing protein, Tetratricopeptide TPR_2 repeat-containing protein; KEGG: hypothetical protein.
  
     0.613
gpr
Germination protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
     0.544
Bccel_2043
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: alpha/beta type small acid-soluble spore protein.
  
     0.506
Bccel_3291
Hypothetical protein; KEGG: nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein.
  
    0.504
Bccel_5108
KEGG: DnaD-like protein; TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region.
  
     0.501
Bccel_4993
KEGG: LysM repeat-containing protein; PFAM: Domain of unknown function DUF3794, Peptidoglycan-binding lysin domain-containing protein; SMART: Peptidoglycan-binding LysM.
 
   
 0.500
Bccel_3517
TIGRFAM: threonine synthase; KEGG: L-threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.
    
  0.493
Bccel_3515
PFAM: homoserine dehydrogenase, homoserine dehydrogenase NAD-binding protein; KEGG: homoserine dehydrogenase.
    
  0.484
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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