STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_5053PFAM: NADH-ubiquinone oxidoreductase chain 49kDa, NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: Ni,Fe-hydrogenase III large subunit. (527 aa)    
Predicted Functional Partners:
Bccel_4956
TIGRFAM: NADH-quinone oxidoreductase, B subunit; KEGG: NADH ubiquinone oxidoreductase 20 kDa subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Belongs to the complex I 20 kDa subunit family.
 0.999
Bccel_5052
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: Formate hydrogenlyase subunit 7.
 0.999
Bccel_5054
NADH dehydrogenase (quinone); KEGG: Hydrogenase-4 component F; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
 0.999
Bccel_5055
Hypothetical protein; KEGG: hydrogenase 4 membrane component (E).
 
  
 0.999
Bccel_5056
PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: Formate hydrogenlyase subunit 4.
 
 0.999
Bccel_5057
NADH dehydrogenase (quinone); KEGG: Hydrogenase-4 component B / Formate hydrogenlyase subunit 3; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
 0.999
Bccel_4957
PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: respiratory-chain NADH dehydrogenase subunit 1.
 
 0.997
Bccel_4953
PFAM: 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: hypothetical protein.
 
 0.994
Bccel_0982
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: NADH:ubiquinone oxidoreductase 24 kD subunit.
  
 0.984
Bccel_2280
TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein, NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein, iron hydrogenase small subunit, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: hydrogenase, Fe-only; SMART: iron hydrogenase small subunit, NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein.
  
 
 0.969
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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