STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_5108KEGG: DnaD-like protein; TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region. (324 aa)    
Predicted Functional Partners:
Bccel_5107
KEGG: DNA replication protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase.
 
  
 0.955
Bccel_3721
PFAM: Protein of unknown function DUF4364; KEGG: hypothetical protein.
  
     0.764
Bccel_5645
PFAM: S-layer domain-containing protein; KEGG: hypothetical protein.
  
     0.749
Bccel_0677
PFAM: Flagellar hook-length control protein-like protein; KEGG: hypothetical protein.
 
     0.732
Bccel_2452
PFAM: S-layer domain-containing protein; KEGG: S-layer protein.
  
     0.726
Bccel_4013
KEGG: hypothetical protein.
  
     0.724
Bccel_3519
PFAM: Tetratricopeptide repeat-containing protein, Tetratricopeptide TPR_2 repeat-containing protein; KEGG: hypothetical protein.
  
     0.721
Bccel_1937
KEGG: hypothetical protein.
 
     0.646
Bccel_4865
KEGG: hypothetical protein.
  
     0.630
Bccel_1059
KEGG: Ig domain-containing protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, APHP domain protein; SMART: Ig domain protein group 2 domain protein.
  
    0.614
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.