STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigI-8Hypothetical protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily. (250 aa)    
Predicted Functional Partners:
Bccel_5134
PFAM: Anti-sigma factor RsgI, N-terminal; KEGG: PA14 domain-containing protein.
 
     0.945
Bccel_2225
PFAM: Anti-sigma factor RsgI, N-terminal; KEGG: glycoside hydrolase.
 
 
 0.910
Bccel_3904
KEGG: flagellar biosynthesis anti-sigma factor FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor protein FlgM; PFAM: Anti-sigma-28 factor FlgM family protein.
  
 0.907
Bccel_3398
Hypothetical protein; KEGG: Cellulose binding domain-containing protein.
 
   0.817
Bccel_0629
PFAM: Anti-sigma factor RsgI, N-terminal; KEGG: S-layer domain protein.
 
   0.816
Bccel_2756
PFAM: Anti-sigma factor RsgI, N-terminal; KEGG: hypothetical protein.
 
   0.812
Bccel_5636
KEGG: Cellulose binding domain-containing protein; PFAM: type 3a cellulose-binding domain protein, Anti-sigma factor RsgI, N-terminal; SMART: type 3a cellulose-binding domain protein.
 
   0.809
Bccel_0726
KEGG: type 3a cellulose-binding domain-containing protein; PFAM: type 3a cellulose-binding domain protein, Anti-sigma factor RsgI, N-terminal; SMART: type 3a cellulose-binding domain protein.
 
   0.794
Bccel_5615
PFAM: Anti-sigma factor RsgI, N-terminal; KEGG: glycoside hydrolase.
  
     0.774
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.736
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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