STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_5185KEGG: phosphodiesterase; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: Calcineurin-like phosphoesterase superfamily domain. (164 aa)    
Predicted Functional Partners:
Bccel_2389
Nucleoside-triphosphatase rdgB; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
  
  
 0.833
Bccel_2888
PFAM: Ankyrin repeat-containing domain-containing protein; KEGG: hypothetical protein.
  
 
 
 0.754
Bccel_4523
PFAM: Ankyrin repeat-containing domain-containing protein; KEGG: hypothetical protein.
  
 
 
 0.731
Bccel_2000
KEGG: peptidase S41; PFAM: peptidase S41, Tetratricopeptide TPR_1 repeat-containing protein; SMART: peptidase S41, Tetratricopeptide repeat-containing protein.
   
 
 0.698
Bccel_1764
PFAM: Ankyrin repeat-containing domain-containing protein; KEGG: ankyrin.
    
 
 0.693
Bccel_2726
PFAM: Ankyrin repeat-containing domain-containing protein; KEGG: ankyrin repeat-containing protein.
    
 
 0.693
Bccel_3807
KEGG: hypothetical protein.
    
 
 0.693
Bccel_5184
KEGG: Zn-dependent hydrolase; PFAM: beta-lactamase domain protein; SMART: beta-lactamase domain protein.
 
    0.585
Bccel_0442
PFAM: esterase; KEGG: putative esterase/lipase.
  
  
 0.459
Bccel_3751
Peroxiredoxin; KEGG: alkyl hydroperoxide reductase; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
   
 
 0.428
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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