STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_5280KEGG: protein possibly involved in post-translational modification of quorum-sensing peptides; PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B. (204 aa)    
Predicted Functional Partners:
Bccel_4201
KEGG: ATP-binding protein.
 
 
 0.868
Bccel_2716
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS domain containing protein; KEGG: hypothetical protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS domain containing protein.
  
 
 0.789
Bccel_0342
Signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: ATP-binding region ATPase domain protein; KEGG: histidine kinase.
 
  
  0.768
Bccel_4999
KEGG: protein possibly involved in post-translational modification of quorum-sensing peptides; PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B.
  
  
 
0.738
Bccel_5278
Signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: ATP-binding region ATPase domain protein; KEGG: histidine kinase.
 
  
  0.724
Bccel_4199
PFAM: Lanthionine synthetase C family protein, Domain of unknown function DUF4135; KEGG: hypothetical protein.
  
  
 0.687
Bccel_5281
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein; KEGG: multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein.
  
 
 0.665
Bccel_5279
TIGRFAM: AgrD family protein.
       0.634
Bccel_4841
KEGG: hypothetical protein.
  
     0.590
Bccel_3668
KEGG: histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
 
 
 0.527
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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