STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_5316PFAM: ATPase associated with various cellular activities AAA_3; KEGG: ATPase. (328 aa)    
Predicted Functional Partners:
Bccel_5317
PFAM: protein of unknown function DUF58; KEGG: hypothetical protein.
 
  
 0.851
Bccel_5315
KEGG: hypothetical protein.
       0.773
Bccel_5318
Hypothetical protein.
       0.773
Bccel_5314
KEGG: transglutaminase; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein.
 
   
 0.697
Bccel_1535
KEGG: transglutaminase; PFAM: transglutaminase domain-containing protein, Domain of unknown function DUF4129; SMART: transglutaminase domain-containing protein.
 
  
 0.689
Bccel_5047
KEGG: transglutaminase; PFAM: transglutaminase domain-containing protein, Domain of unknown function DUF4129; SMART: transglutaminase domain-containing protein.
 
  
 0.647
Bccel_3954
KEGG: hypothetical protein; PFAM: protein of unknown function DUF58; SMART: von Willebrand factor type A.
  
 0.529
Bccel_2434
KEGG: arginine/lysine/ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region, Orn/Lys/Arg decarboxylase domain protein.
   
 
 0.508
Bccel_4428
KEGG: arginine/lysine/ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region, Orn/Lys/Arg decarboxylase domain protein.
   
 
 0.508
Bccel_1533
PFAM: protein of unknown function DUF58; KEGG: hypothetical protein.
 
  
 0.496
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.