STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_5384PFAM: TROVE domain-containing protein; KEGG: TROVE domain protein. (525 aa)    
Predicted Functional Partners:
Bccel_2157
KEGG: VWA domain containing CoxE-like protein; PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A.
 
  
  0.718
Bccel_4459
PFAM: metal-dependent phosphohydrolase HD sub domain-containing protein; KEGG: metal dependent phosphohydrolase.
 
     0.699
Bccel_1656
KEGG: hypothetical protein.
  
     0.690
Bccel_5385
PFAM: RNA ligase domain, REL/Rln2; KEGG: RNA ligase, DRB0094 family.
       0.668
Bccel_2159
PFAM: ATPase associated with various cellular activities AAA_5; KEGG: hypothetical protein.
 
  
 0.612
Bccel_4461
Hypothetical protein; KEGG: ATP-dependent DNA ligase.
 
     0.610
Bccel_4462
PFAM: tRNAHis guanylyltransferase catalytic domain, Thg1 C-terminal domain; KEGG: hypothetical protein.
  
     0.610
Bccel_2158
KEGG: hypothetical protein.
 
   
 0.602
Bccel_0418
KEGG: ATPase; PFAM: Protein of unknown function DUF3686, AAA ATPase central domain protein; SMART: AAA ATPase.
 
  
 0.597
Bccel_2160
KEGG: hypothetical protein; PFAM: Domain of unknown function DUF4132, WGR domain-containing protein; SMART: WGR domain-containing protein.
 
     0.576
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.