STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_5462KEGG: hypothetical protein. (104 aa)    
Predicted Functional Partners:
Bccel_5461
KEGG: hypothetical protein.
      0.854
Bccel_4987
KEGG: AAA ATPase, central region; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
   
 0.805
Bccel_0601
KEGG: hypothetical protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
   
 0.804
Bccel_5459
KEGG: hypothetical protein.
       0.781
Bccel_5460
Hypothetical protein.
       0.773
Bccel_3660
KEGG: flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein, flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
   
   0.666
mnmG
tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
   
   0.636
Bccel_0617
Integral membrane sensor hybrid histidine kinase; KEGG: sensor protein; PFAM: response regulator receiver, ATP-binding region ATPase domain protein, histidine kinase A domain protein, Diverse 7TM receptor transmembrane region, histidine kinase internal region; SMART: response regulator receiver, histidine kinase A domain protein, ATP-binding region ATPase domain protein.
    
 0.566
Bccel_4610
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS fold-4 domain protein, PAS fold-3 domain protein, response regulator receiver, Hpt domain protein; KEGG: signal transduction histidine kinase-like protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAC repeat-containing protein, GAF domain protein, PAS domain containing protein, response regulator receiver.
   
 0.501
Bccel_1137
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: hypothetical protein.
   
 0.494
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.