STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_5508Cellulase; KEGG: endoglucanase; PFAM: glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (438 aa)    
Predicted Functional Partners:
Bccel_4196
PFAM: type IV pilus assembly PilZ; KEGG: family 2 glycosyl transferase.
   
  0.924
Bccel_0723
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
0.826
Bccel_1816
Cellulase; KEGG: glycoside hydrolase; PFAM: glycoside hydrolase family 9.
  
  0.821
Bccel_4498
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
  0.813
Bccel_2002
Cellulase; KEGG: dockerin-like protein; PFAM: glycoside hydrolase family 9.
  
 
0.807
Bccel_2823
Cellulase; KEGG: dockerin-like protein; PFAM: glycoside hydrolase family 9; Belongs to the glycosyl hydrolase 9 (cellulase E) family.
  
 
0.806
Bccel_0386
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
0.803
Bccel_4937
Mannan endo-1,4-beta-mannosidase; PFAM: Endoglucanase H/Glycosyl hydrolase family 26, Ricin B lectin; KEGG: mannan endo-1,4-beta-mannosidase; SMART: Ricin B lectin; Belongs to the glycosyl hydrolase 26 family.
 
  
 0.778
Bccel_0022
PFAM: glycoside hydrolase family 10; KEGG: xylanase B.
  
  
 0.760
Bccel_0522
Cellulase; PFAM: glycoside hydrolase family 9, type 3a cellulose-binding domain protein; KEGG: glycoside hydrolase; SMART: type 3a cellulose-binding domain protein; Belongs to the glycosyl hydrolase 9 (cellulase E) family.
  
0.735
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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