STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_5603Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10. (769 aa)    
Predicted Functional Partners:
Bccel_1712
Xylan 1,4-beta-xylosidase; KEGG: beta-xylosidase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
 0.822
Bccel_3113
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43, Carbohydrate binding family 6, protein of unknown function DUF303 acetylesterase; KEGG: family 6 carbohydrate binding protein; SMART: cellulose binding type IV.
 
 0.816
Bccel_4966
Xylan 1,4-beta-xylosidase; KEGG: glycoside hydrolase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
 0.815
Bccel_3097
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43, Carbohydrate binding family 6; KEGG: beta-xylosidase; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 43 family.
  
 0.813
Bccel_3115
PFAM: glycoside hydrolase family 43; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 43 family.
  
 0.807
Bccel_3114
KEGG: glycoside hydrolase; PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV.
 
 
   0.794
Bccel_0723
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.784
Bccel_5538
KEGG: hypothetical protein.
 
     0.770
Bccel_0446
PFAM: glycoside hydrolase family 8, polysaccharide deacetylase; KEGG: glycoside hydrolase.
 
   
 0.766
Bccel_5635
KEGG: BNR/Asp-box repeat protein,dockerin-like protein.
  
     0.764
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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