STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_5620PFAM: lipolytic protein G-D-S-L family; KEGG: G-D-S-L lipolytic protein. (299 aa)    
Predicted Functional Partners:
Bccel_5179
KEGG: pectinesterase; PFAM: Pectinesterase, Carbohydrate binding family 6.
  
0.961
Bccel_5538
KEGG: hypothetical protein.
 
 
  0.857
Bccel_3489
Hypothetical protein; KEGG: fibronectin type III domain-containing protein.
  
 0.843
Bccel_3806
KEGG: pectate lyase; PFAM: Pectate lyase.
 
 0.838
Bccel_0386
PFAM: glycoside hydrolase family 5; KEGG: glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
0.828
Bccel_3093
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10, glycoside hydrolase family 11; KEGG: beta-1,4-xylanase; SMART: glycoside hydrolase family 10; Belongs to the glycosyl hydrolase 10 (cellulase F) family.
 
0.804
Bccel_5621
KEGG: G-D-S-L lipolytic protein.
 
   
0.782
Bccel_5619
KEGG: G-D-S-L lipolytic protein.
     
 0.774
Bccel_3115
PFAM: glycoside hydrolase family 43; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.773
Bccel_5153
PFAM: Endoglucanase H/Glycosyl hydrolase family 26; KEGG: beta-mannanase; Belongs to the glycosyl hydrolase 26 family.
 
  
0.773
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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