STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_5748KEGG: hypothetical protein. (473 aa)    
Predicted Functional Partners:
Bccel_5747
PFAM: Protein of unknown function DUF4280; KEGG: hypothetical protein.
     
 0.614
Bccel_5749
Hypothetical protein; KEGG: bcn, bacteriocin.
       0.508
Bccel_5746
KEGG: serine/threonine protein phosphatase.
  
  
 0.484
Bccel_5750
KEGG: YD repeat protein; TIGRFAM: RHS repeat-associated core domain-containing protein, YD repeat protein; PFAM: YD repeat-containing protein, RES domain protein.
 
  
 0.456
Bccel_0562
PFAM: Motility protein B, N-terminal domain, OmpA/MotB domain protein; KEGG: OmpA/MotB domain-containing protein.
  
  
 0.425
Bccel_1404
PFAM: Motility protein B, N-terminal domain, OmpA/MotB domain protein; KEGG: OmpA/MotB.
  
  
 0.425
Bccel_3791
PFAM: OmpA/MotB domain protein, Motility protein B, N-terminal domain; KEGG: OmpA/MotB domain-containing protein.
  
  
 0.425
Bccel_5745
SMART: protein phosphatase 2C domain protein; KEGG: protein phosphatase 2C.
  
  
 0.422
Bccel_5744
PFAM: Forkhead-associated protein; KEGG: hypothetical protein.
     
 0.410
Bccel_2325
KEGG: chaperone ATPase; PFAM: ATPase AAA-2 domain protein, Clp ATPase domain-containing protein, AAA ATPase central domain protein; SMART: Clp ATPase domain-containing protein, AAA ATPase; Belongs to the ClpA/ClpB family.
  
  
 0.407
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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