STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_5759KEGG: hypothetical protein; TIGRFAM: RHS repeat-associated core domain-containing protein; PFAM: RES domain protein. (223 aa)    
Predicted Functional Partners:
Bccel_5758
Hypothetical protein.
       0.714
Bccel_1764
PFAM: Ankyrin repeat-containing domain-containing protein; KEGG: ankyrin.
  
  
 0.689
Bccel_5743
KEGG: hypothetical protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein.
  
    0.537
Bccel_3717
PFAM: Zinc-ribbon domain; KEGG: hypothetical protein.
  
     0.526
Bccel_2901
PFAM: Forkhead-associated protein; KEGG: hypothetical protein.
  
    0.510
Bccel_5744
PFAM: Forkhead-associated protein; KEGG: hypothetical protein.
  
    0.506
Bccel_5647
PFAM: protein of unknown function DUF1779; KEGG: hypothetical protein.
  
     0.466
Bccel_3073
KEGG: integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein.
  
     0.439
Bccel_5760
KEGG: hypothetical protein.
       0.426
Bccel_5757
KEGG: parB-like partition protein.
  
    0.416
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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