STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_5762PFAM: Protein of unknown function DUF2493; KEGG: hypothetical protein. (114 aa)    
Predicted Functional Partners:
Bccel_3645
CheC, phosphatase, inhibitor of MCP methylation; KEGG: flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein, CheC domain protein.
  
    0.564
Bccel_3906
PFAM: phosphoribosyltransferase; KEGG: phosphoribosyltransferase.
  
 
 0.529
Bccel_1080
Metal dependent phosphohydrolase; KEGG: HD-GYP/response regulator domain-containing protein; PFAM: metal-dependent phosphohydrolase HD sub domain-containing protein; SMART: metal-dependent phosphohydrolase HD region.
   
    0.485
Bccel_0338
KEGG: DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein, Domain of unknown function DUF4131.
  
  
 0.478
Bccel_0339
Beta-lactamase domain protein; KEGG: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; SMART: beta-lactamase domain protein.
  
  
 0.478
Bccel_5763
Hypothetical protein.
       0.452
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
  
    0.435
Bccel_1974
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.427
Bccel_3027
PFAM: peptidase A24A prepilin type IV; KEGG: peptidase A24A prepilin type IV.
  
  
 0.427
Bccel_3670
Peptidase A24A prepilin type IV; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.427
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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