STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACD14601.1PFAM: type IV secretory pathway VirB3 family protein; KEGG: bxe:Bxe_C0449 putative type IV secretion system protein VirB3/TraD. (110 aa)    
Predicted Functional Partners:
ACD14602.1
TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE TrbE VirB component of type IV transporter system; KEGG: bxe:Bxe_C0450 putative type IV secretion system protein VirB4/TraE.
  
 
 0.969
ACD14600.1
PFAM: Conjugal transfer protein TrbC; KEGG: bxe:Bxe_C0448 putative type IV secretion system protein VirB2/TraC.
  
  
 0.933
ACD14603.1
PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: bxe:Bxe_C0451 putative type IV secretion system protein VirB6/TraH.
  
  
 0.933
ACD14606.1
PFAM: VirB8 family protein; KEGG: bxe:Bxe_C0453 putative type IV secretion system protein VirB8/TraJ.
  
 
 0.920
ACD20811.1
PFAM: type IV secretory pathway VirB3 family protein; KEGG: bxe:Bxe_A2656 putative type IV secretion system protein VirB3/TraD.
     
 
0.900
ACD14607.1
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bxe:Bxe_C0454 putative type IV secretion system protein VirB9.
  
  
 0.899
ACD14608.1
PFAM: conjugation TrbI family protein; KEGG: bxe:Bxe_C0455 putative type IV secretion system protein VirB10.
  
  
 0.899
ACD20810.1
TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE TrbE VirB component of type IV transporter system; KEGG: bxe:Bxe_A2655 putative type IV secretion system protein VirB4/TraE.
  
 
 0.869
ACD14609.1
P-type DNA transfer ATPase VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.
  
  
 0.831
ACD14604.1
TIGRFAM: P-type DNA transfer protein VirB5; PFAM: type IV secretion system family protein; KEGG: bxe:Bxe_C0452 putative type IV secretion system protein VirB5/TraF.
     
 0.808
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.