STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACD14639.1PFAM: GCN5-related N-acetyltransferase; KEGG: mpt:Mpe_A2343 As reductase. (148 aa)    
Predicted Functional Partners:
ACD14638.1
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: bxe:Bxe_B0303 arsenite/antimonite exporter, ArsB like.
     
 0.837
ACD14637.1
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rme:Rmet_0331 protein tyrosine phosphatase.
  
  
 0.831
ACD21464.1
TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: bxe:Bxe_B0302 arsenate reductase.
      0.827
ACD14640.1
TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: bxe:Bxe_B0301 putative arsinic resistance protein ArsH.
  
  
 0.764
ACD14641.1
PFAM: major facilitator superfamily MFS_1; KEGG: azc:AZC_1275 hypothetical protein.
     
 0.708
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.634
argG
PFAM: argininosuccinate synthase; KEGG: bxe:Bxe_A0756 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.526
ACD14642.1
PFAM: integrase family protein; KEGG: dac:Daci_2980 integrase family protein.
       0.503
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.500
ACD17781.1
KEGG: bxe:Bxe_A0566 glyceraldehyde-3-phosphate dehydrogenase, typeI; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.498
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.