STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACD15235.1PFAM: NUDIX hydrolase; KEGG: bxe:Bxe_A3872 putative GDP-mannose mannosyl hydrolase. (151 aa)    
Predicted Functional Partners:
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 0.850
gmd-2
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 0.835
ACD15236.1
KEGG: bxe:Bxe_A3871 hypothetical protein.
       0.639
ACD15234.1
KEGG: bxe:Bxe_A3873 hypothetical protein.
 
     0.606
ACD15246.1
PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_A3860 predicted glycosyl transferase.
  
  
 0.590
ACD15237.1
KEGG: bxe:Bxe_A3870 hypothetical protein.
 
     0.565
ACD15248.1
KEGG: bxe:Bxe_A3858 hypothetical protein.
 
  
 0.459
ACD16121.1
TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: bxe:Bxe_A2531 undecaprenyl-phosphate galactosephosphotransferase.
 
    0.443
ACD20864.1
PFAM: permease; KEGG: bxe:Bxe_B2557 conserved hypothetical membrane protein, YraQ-like.
  
    0.436
ACD16391.1
TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: bxe:Bxe_A2213 putative ferredoxin subunit of nitrate/nitrite reductase (NADPH).
  
     0.420
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.