STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACD15840.1KEGG: bxe:Bxe_A3017 hypothetical protein. (186 aa)    
Predicted Functional Partners:
ACD18979.1
KEGG: bxe:Bxe_B0905 hypothetical protein.
  
     0.643
ACD19018.1
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bte:BTH_II0077 hypothetical protein.
  
     0.627
ACD16370.1
KEGG: bxe:Bxe_A2239 putative transmembrane protein.
  
     0.598
ACD16369.1
KEGG: bxe:Bxe_A2240 putative glycosyltransferase group 1, RfaG-like.
  
     0.592
ACD15338.1
PFAM: polysaccharide biosynthesis protein; KEGG: bxe:Bxe_A3702 polysaccharide exporter, PST family.
  
     0.583
ACD15936.1
KEGG: bxe:Bxe_A2952 hypothetical protein.
 
     0.582
ACD17299.1
PFAM: Anti sigma-E protein RseA family protein; KEGG: bxe:Bxe_A1079 anti sigma-E protein, RseA.
  
     0.541
ACD17489.1
KEGG: bxe:Bxe_A0897 hypothetical protein.
  
     0.513
ACD21118.1
KEGG: bxe:Bxe_B2865 putative trehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
  
  
 0.510
ACD21115.1
Trehalose synthase; KEGG: bxe:Bxe_B2862 putative trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
  
    0.494
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.