Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACD16376.1KEGG: bxe:Bxe_A2230 hypothetical protein. (733 aa)    
Predicted Functional Partners:
ACD16377.1
PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: bxe:Bxe_A2229 polysaccharide transporter, (PST) family.
 
     0.804
ACD16370.1
KEGG: bxe:Bxe_A2239 putative transmembrane protein.
  
     0.774
ACD16368.1
PFAM: glycosyl transferase family 2; KEGG: bxe:Bxe_A2241 putative glycosyl transferase, family 2, involved in cell wall biogenesis.
  
     0.771
ACD16371.1
PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_A2238 putative glycosyl transferase, group 1.
  
    0.758
ACD16372.1
PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_A2237 predicted glycosyl transferase, group 1.
  
    0.749
ACD21297.1
KEGG: bxe:Bxe_B3026 putative replication protein.
  
     0.732
ACD16378.1
PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_A2228 putative first mannosyl transferase, WbaZ.
 
    0.665
ACD16698.1
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: bxe:Bxe_A1958 putative TPR repeat membrane protein.
  
     0.659
ACD16379.1
PFAM: acyltransferase 3; KEGG: bxe:Bxe_A2227 putative lipopolysaccharide biosynthesis-related membrane protein.
  
   
 0.638
ACD15951.1
KEGG: bxe:Bxe_A2939 putative transmembrane protein.
  
     0.619
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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