STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACD16405.1Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rle:RL3039 putative AraC family transcriptional regulator. (334 aa)    
Predicted Functional Partners:
ACD19998.1
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_B1083 transcriptional regulator, AraC family.
  
     0.749
ACD16404.1
PFAM: Copper amine oxidase; Copper amine oxidase N2-terminal; Copper amine oxidase N3-terminal; KEGG: bra:BRADO6525 tyramine oxidase.
       0.495
ACD20970.1
KEGG: smd:Smed_3790 hypothetical protein.
  
     0.484
ACD16403.1
KEGG: ret:RHE_CH02708 hypothetical protein.
       0.423
ACD16406.1
PFAM: amino acid permease-associated region; KEGG: rle:RL3038 putative transmembrane permease protein.
     
 0.420
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.