STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACD16407.1PFAM: porin Gram-negative type; KEGG: bmu:Bmul_3587 outer membrane porin OpcP. (404 aa)    
Predicted Functional Partners:
ACD14732.1
PFAM: Thioredoxin domain; KEGG: bxe:Bxe_A4418 putative thioredoxin protein.
  
 
   0.771
ACD15751.1
KEGG: bxe:Bxe_A3222 putative lipoprotein.
  
     0.750
ACD17497.1
PFAM: Lytic transglycosylase catalytic; KEGG: bxe:Bxe_A0889 putative transglycosylase SLT domain lipoprotein.
  
     0.741
ACD21090.1
KEGG: bxe:Bxe_B2841 putative transmembrane protein.
  
     0.740
priB
Putative primosomal replication protein N, PriB; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
    0.738
ACD16227.1
KEGG: bxe:Bxe_A2368 putative inner membrane protein.
  
     0.733
ACD16858.1
ZipA FtsZ-binding region; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.729
ACD21153.1
KEGG: bxe:Bxe_B2901 hypothetical protein.
  
     0.712
ACD14739.1
KEGG: bxe:Bxe_A4411 hypothetical protein.
  
     0.701
ACD17393.1
KEGG: bxe:Bxe_A0984 hypothetical protein.
  
     0.698
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.