STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACD16412.1PFAM: aminotransferase class-III; KEGG: bte:BTH_II2249 glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (454 aa)    
Predicted Functional Partners:
ACD18003.1
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: bxe:Bxe_A0344 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
 
 0.961
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
 0.950
ACD16413.1
Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: bcm:Bcenmc03_6419 glutamate--putrescine ligase.
  
 0.704
ACD16411.1
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bcm:Bcenmc03_6417 transcriptional regulator, GntR family.
 
     0.644
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
  
 0.618
ACD18871.1
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; cytochrome c biogenesis protein transmembrane region; Redoxin domain protein; KEGG: bxe:Bxe_B0816 putative transmembrane protein.
  
  
 0.616
ACD19035.1
PFAM: aminotransferase class-III; KEGG: bxe:Bxe_B0941 putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.610
ACD18456.1
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: bxe:Bxe_B0525 non-ribosomal peptide synthase.
  
 
 0.489
ACD17999.1
TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: bxe:Bxe_A0348 cytochrome c assembly protein.
 
  
 0.461
ACD18594.1
PFAM: Citrate synthase; KEGG: bch:Bcen2424_3209 citrate synthase.
 
    0.456
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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