STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACD16414.1PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A2202 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (276 aa)    
Predicted Functional Partners:
ACD20103.1
PFAM: NAD-dependent epimerase/dehydratase; KEGG: bxe:Bxe_B1099 putative epimerase/dehydratase.
 
 
 
 0.617
ACD16415.1
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: bxe:Bxe_A2201 transcriptional regulator, AraC family.
 
     0.551
ACD20034.1
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_B1031 putative short-chain alcohol dehydrogenase.
  
 
   0.478
ACD16413.1
Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: bcm:Bcenmc03_6419 glutamate--putrescine ligase.
     
 0.461
ACD16100.1
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reh:H16_B1786 short-chain alcohol dehydrogenase of unknown specificity.
  
 
   0.408
ACD18529.1
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reh:H16_B1786 short-chain alcohol dehydrogenase of unknown specificity.
  
 
   0.401
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.