Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACD16525.1KEGG: reu:Reut_B4489 antibiotic biosynthesis monooxygenase. (224 aa)    
Predicted Functional Partners:
ACD19777.1
PFAM: NIPSNAP family containing protein; KEGG: bxe:Bxe_B1182 hypothetical protein.
 
     0.720
ACD14705.1
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; regulatory protein ArsR; KEGG: spe:Spro_2819 putative transcriptional regulator, ArsR family.
 
     0.717
ACD17346.1
PFAM: regulatory protein ArsR; KEGG: bxe:Bxe_A1033 transcriptional regulator, ArsR family.
 
     0.705
ACD20615.1
KEGG: aby:ABAYE2503 hypothetical protein; putative exported protein.
  
     0.542
ACD19988.1
KEGG: gvi:glr0395 hypothetical protein.
  
     0.539
ACD16798.1
KEGG: ava:Ava_C0154 hypothetical protein.
  
     0.529
ACD19077.1
KEGG: aby:ABAYE2503 hypothetical protein; putative exported protein.
  
     0.526
ACD19102.1
KEGG: azc:AZC_0723 hypothetical membrane protein.
  
     0.511
ACD16292.1
KEGG: bxe:Bxe_B2662 hypothetical protein.
  
     0.503
ACD19083.1
KEGG: azc:AZC_1508 putative formyl transferase.
  
     0.446
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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