STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACD16601.1Hopanoid biosynthesis associated radical SAM protein HpnJ; KEGG: bxe:Bxe_A2062 putative methyltransferase, or Fe-S oxidoreductase; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (473 aa)    
Predicted Functional Partners:
ACD16600.1
TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; KEGG: bxe:Bxe_A2063 putative (ceramide) glucosyltransferase.
 
   
 0.954
ACD16599.1
TIGRFAM: membrane protein; KEGG: bxe:Bxe_A2064 conserved hypothetical protein 374.
 
    0.885
ACD16594.1
TIGRFAM: hopanoid biosynthesis associated protein HpnK; PFAM: YdjC family protein; KEGG: bxe:Bxe_A2069 hypothetical phospho-beta-glucosidase, YdjC-like protein, cellobiose degradation.
 
   
 0.843
ACD14517.1
PFAM: 4-vinyl reductase 4VR; KEGG: bxe:Bxe_B1583 hypothetical protein.
  
  
 0.842
ACD19429.1
PFAM: 4-vinyl reductase 4VR; KEGG: bxe:Bxe_B1583 hypothetical protein.
  
  
 0.842
ACD21323.1
TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM domain protein; KEGG: bxe:Bxe_B0017 MoaA/NifB/PqqE family protein.
 
  
 0.838
ACD16595.1
TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; PFAM: glycosyl transferase family 2; KEGG: bxe:Bxe_A2068 putative (ceramide) glycosyl transferase, family2.
 
   
 0.806
ACD21317.1
Squalene-hopene cyclase; KEGG: bxe:Bxe_B0012 terpene synthase; TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.
 
   
 0.801
ACD21326.1
TIGRFAM: hopene-associated glycosyltransferase HpnB; PFAM: glycosyl transferase family 2; KEGG: bxe:Bxe_B0020 glycosyl transferase, group 2 family.
 
   
 0.794
ACD21328.1
TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; NmrA family protein; Male sterility domain; KEGG: bxe:Bxe_B0022 hypothetical protein.
 
   
 0.752
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.