node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACD14738.1 | ligA | Bphyt_0313 | Bphyt_2461 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.641 |
ACD17191.1 | ligA | Bphyt_2797 | Bphyt_2461 | PFAM: UvrD/REP helicase; KEGG: bxe:Bxe_A1337 DNA helicase II protein. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.684 |
ACD17191.1 | polA | Bphyt_2797 | Bphyt_6788 | PFAM: UvrD/REP helicase; KEGG: bxe:Bxe_A1337 DNA helicase II protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.676 |
ACD17191.1 | ruvB | Bphyt_2797 | Bphyt_3346 | PFAM: UvrD/REP helicase; KEGG: bxe:Bxe_A1337 DNA helicase II protein. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.508 |
ACD17191.1 | trmD | Bphyt_2797 | Bphyt_2975 | PFAM: UvrD/REP helicase; KEGG: bxe:Bxe_A1337 DNA helicase II protein. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.595 |
ACD19651.1 | ligA | Bphyt_5292 | Bphyt_2461 | PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: bxe:Bxe_B1315 ATP-dependent DNA ligase. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.921 |
ACD19651.1 | polA | Bphyt_5292 | Bphyt_6788 | PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: bxe:Bxe_B1315 ATP-dependent DNA ligase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.929 |
def-2 | ligA | Bphyt_2460 | Bphyt_2461 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.823 |
def-2 | polA | Bphyt_2460 | Bphyt_6788 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.447 |
leuS | ligA | Bphyt_3380 | Bphyt_2461 | TIGRFAM: leucyl-tRNA synthetase; KEGG: bxe:Bxe_A0576 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.840 |
leuS | pheS | Bphyt_3380 | Bphyt_2752 | TIGRFAM: leucyl-tRNA synthetase; KEGG: bxe:Bxe_A0576 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: bxe:Bxe_A1375 phenylalanyl-tRNA synthetase subunit alpha; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.610 |
leuS | polA | Bphyt_3380 | Bphyt_6788 | TIGRFAM: leucyl-tRNA synthetase; KEGG: bxe:Bxe_A0576 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.636 |
leuS | trmD | Bphyt_3380 | Bphyt_2975 | TIGRFAM: leucyl-tRNA synthetase; KEGG: bxe:Bxe_A0576 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.465 |
ligA | ACD14738.1 | Bphyt_2461 | Bphyt_0313 | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.641 |
ligA | ACD17191.1 | Bphyt_2461 | Bphyt_2797 | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | PFAM: UvrD/REP helicase; KEGG: bxe:Bxe_A1337 DNA helicase II protein. | 0.684 |
ligA | ACD19651.1 | Bphyt_2461 | Bphyt_5292 | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: bxe:Bxe_B1315 ATP-dependent DNA ligase. | 0.921 |
ligA | def-2 | Bphyt_2461 | Bphyt_2460 | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.823 |
ligA | leuS | Bphyt_2461 | Bphyt_3380 | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | TIGRFAM: leucyl-tRNA synthetase; KEGG: bxe:Bxe_A0576 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.840 |
ligA | pheS | Bphyt_2461 | Bphyt_2752 | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: bxe:Bxe_A1375 phenylalanyl-tRNA synthetase subunit alpha; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.644 |
ligA | polA | Bphyt_2461 | Bphyt_6788 | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.711 |