STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACD17440.1KEGG: bxe:Bxe_A0943 putative excinuclease, ATPase subunit. (147 aa)    
Predicted Functional Partners:
ACD17451.1
PFAM: glycosyl transferase family 2; lipid A biosynthesis acyltransferase; KEGG: bxe:Bxe_A0932 hypothetical protein.
 
   
 0.897
ACD17452.1
PFAM: AMP-dependent synthetase and ligase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: bxe:Bxe_A0931 putative AMP-dependent synthetase and ligase.
 
     0.896
ACD17445.1
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: bxe:Bxe_A0938 hypothetical protein.
 
     0.890
ACD17453.1
KEGG: bxe:Bxe_A0930 hypothetical protein.
 
     0.890
ACD17447.1
KEGG: bxe:Bxe_A0936 putative drug efflux pump, RND superfamily.
 
     0.888
ACD17448.1
Conserved hypothetical signal peptide protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
   
 0.888
ACD17457.1
KEGG: bxe:Bxe_A0926 hypothetical protein.
 
   
 0.885
ACD17455.1
KEGG: bxe:Bxe_A0928 putative acyl-carrier protein.
 
     0.883
ACD17456.1
PFAM: phospholipid/glycerol acyltransferase; KEGG: bxe:Bxe_A0927 putative acyltransferase.
 
     0.879
ACD17449.1
PFAM: thioesterase superfamily protein; KEGG: bxe:Bxe_A0934 hypothetical protein.
 
     0.878
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.