rpsT protein (Paraburkholderia phytofirmans)

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gene neighborhood

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rpsT

Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (92 aa)

Predicted Functional Partners:

rpmF

0.989

rpmB

0.988

rplM

0.988

rpsO

0.987

rpmE2

0.987

rpsP

0.987

rplU

0.987

rpmA

0.986

rplY

0.983

rpsI

0.983

Your Current Organism:

Paraburkholderia phytofirmans

NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplU	Bphyt_3354	Bphyt_3449	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.990
rplM	rplY	Bphyt_3354	Bphyt_0584	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.990
rplM	rpmA	Bphyt_3354	Bphyt_3448	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein L27; KEGG: bxe:Bxe_A0508 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.996
rplM	rpmB	Bphyt_3354	Bphyt_3149	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein L28; KEGG: bxe:Bxe_A0817 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.988
rplM	rpmE2	Bphyt_3354	Bphyt_1820	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein L31; KEGG: bxe:Bxe_A2367 50S ribosomal protein L31 type B.	0.984
rplM	rpmF	Bphyt_3354	Bphyt_2914	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: bcm:Bcenmc03_1077 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.987
rplM	rpsI	Bphyt_3354	Bphyt_3353	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein S9; KEGG: bxe:Bxe_A0608 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.998
rplM	rpsO	Bphyt_3354	Bphyt_1338	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.996
rplM	rpsP	Bphyt_3354	Bphyt_2977	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein S16; KEGG: bxe:Bxe_A1006 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.992
rplM	rpsT	Bphyt_3354	Bphyt_3203	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.988
rplU	rplM	Bphyt_3449	Bphyt_3354	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.990
rplU	rplY	Bphyt_3449	Bphyt_0584	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.985
rplU	rpmA	Bphyt_3449	Bphyt_3448	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	PFAM: ribosomal protein L27; KEGG: bxe:Bxe_A0508 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.997
rplU	rpmB	Bphyt_3449	Bphyt_3149	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	PFAM: ribosomal protein L28; KEGG: bxe:Bxe_A0817 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.988
rplU	rpmE2	Bphyt_3449	Bphyt_1820	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	PFAM: ribosomal protein L31; KEGG: bxe:Bxe_A2367 50S ribosomal protein L31 type B.	0.987
rplU	rpmF	Bphyt_3449	Bphyt_2914	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: bcm:Bcenmc03_1077 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.988
rplU	rpsI	Bphyt_3449	Bphyt_3353	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	PFAM: ribosomal protein S9; KEGG: bxe:Bxe_A0608 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.991
rplU	rpsO	Bphyt_3449	Bphyt_1338	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.985
rplU	rpsP	Bphyt_3449	Bphyt_2977	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	PFAM: ribosomal protein S16; KEGG: bxe:Bxe_A1006 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.990
rplU	rpsT	Bphyt_3449	Bphyt_3203	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.987