Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ACD17992.1KEGG: bxe:Bxe_A0355 hypothetical protein. (330 aa)    
Predicted Functional Partners:
ACD17989.1
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: bxe:Bxe_A0358 putative fimbrial type-4 assembly signal peptide, PilQ-like.
 
 
 0.968
ACD17990.1
KEGG: bxe:Bxe_A0357 hypothetical protein.
  
 
 0.940
ACD17991.1
PFAM: Fimbrial assembly family protein; KEGG: bxe:Bxe_A0356 hypothetical protein.
       0.857
ACD15192.1
KEGG: bxe:Bxe_A3911 hypothetical protein.
 
   
 0.812
ACD18332.1
TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: bxe:Bxe_A4492 putative general secretory pathway protein L.
  
   
 0.768
ACD21137.1
KEGG: bxe:Bxe_B2884 hypothetical protein.
  
     0.765
ACD18873.1
KEGG: bxe:Bxe_B0820 hypothetical protein.
  
     0.760
ACD20251.1
KEGG: bxe:Bxe_B2116 hypothetical protein.
  
     0.758
ACD21160.1
PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: bxe:Bxe_B2908 putative haemagglutinin.
  
     0.758
ACD15234.1
KEGG: bxe:Bxe_A3873 hypothetical protein.
  
     0.741
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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