STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACD19364.1TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bxe:Bxe_B1647 CobW. (363 aa)    
Predicted Functional Partners:
ACD19365.1
Cobaltochelatase, CobN subunit; KEGG: bxe:Bxe_B1646 cobaltochelatase; TIGRFAM: cobaltochelatase, CobN subunit; PFAM: CobN/magnesium chelatase.
 
  
 0.940
ACD19366.1
KEGG: bxe:Bxe_B1645 putative magnesium chelatase, ChlI subunit; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
 
  
 0.845
ACD19367.1
KEGG: bxe:Bxe_B1644 hypothetical protein.
 
  
 0.670
ACD19727.1
Precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; KEGG: bxe:Bxe_B1246 precorrin-6Y C5,15-methyltransferase(decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
 
   
 0.629
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.620
ACD19731.1
TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: bxe:Bxe_B1242 precorrin-3B C17-methyltransferase.
 
   
 0.570
folE2
Protein of unknown function DUF198; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.493
ACD19729.1
PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: bxe:Bxe_B1244 precorrin-8X methylmutase.
 
   
 0.468
ACD19725.1
KEGG: bxe:Bxe_B1248 cobalt-precorrin-6x reductase; TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK.
 
   
 0.467
rpmB
PFAM: ribosomal protein L28; KEGG: bxe:Bxe_A0817 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.460
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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