Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0013PFAM: MaoC domain protein dehydratase; KEGG: rme:Rmet_3812 MaoC-like dehydratase. (154 aa)    
Predicted Functional Partners:
Daci_0014
PFAM: protein of unknown function UPF0153; KEGG: ajs:Ajs_4149 protein of unknown function UPF0153.
  
    0.760
Daci_0012
PFAM: conserved hypothetical protein; KEGG: rme:Rmet_3811 uncharacterized protein UPF0065.
       0.758
Daci_0178
PFAM: protein of unknown function DUF35; KEGG: ajs:Ajs_0128 protein of unknown function DUF35.
 
 
 0.718
Daci_2996
KEGG: ajs:Ajs_0059 hypothetical protein.
  
     0.691
Daci_0177
Thiolase; KEGG: ajs:Ajs_0129 thiolase.
 
 
 0.577
Daci_0088
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ajs:Ajs_0061 acyl-CoA dehydrogenase domain protein.
 
 0.576
Daci_4268
PFAM: Catalase domain protein; KEGG: ajs:Ajs_1958 catalase.
   
 0.571
Daci_4342
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.571
Daci_1339
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_0594 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
 0.544
Daci_1393
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_3739 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.544
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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