STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0014PFAM: protein of unknown function UPF0153; KEGG: ajs:Ajs_4149 protein of unknown function UPF0153. (172 aa)    
Predicted Functional Partners:
Daci_0013
PFAM: MaoC domain protein dehydratase; KEGG: rme:Rmet_3812 MaoC-like dehydratase.
  
    0.760
Daci_0012
PFAM: conserved hypothetical protein; KEGG: rme:Rmet_3811 uncharacterized protein UPF0065.
       0.736
Daci_0011
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A3376 transcriptional regulator, LysR-family.
       0.511
Daci_2487
KEGG: aav:Aave_2295 hypothetical protein.
  
     0.499
Daci_2174
PFAM: protein of unknown function UPF0153; KEGG: aav:Aave_1159 protein of unknown function UPF0153.
  
     0.490
Daci_0631
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
  
   0.466
Daci_4811
PFAM: peptidase U32; KEGG: ajs:Ajs_2285 peptidase U32.
  
     0.444
Daci_5883
KEGG: pna:Pnap_1452 hypothetical protein.
 
     0.422
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.