STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0033PFAM: regulatory protein TetR; KEGG: rfr:Rfer_4061 transcriptional regulator, TetR family. (256 aa)    
Predicted Functional Partners:
Daci_0031
PFAM: inner-membrane translocator; KEGG: rfr:Rfer_4063 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.590
Daci_0029
PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_4065 extracellular ligand-binding receptor.
 
     0.562
Daci_0030
PFAM: inner-membrane translocator; KEGG: rfr:Rfer_4064 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.551
Daci_0032
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpa:BPP2037 high-affinity branched-chain amino acid transport ATP-binding protein.
       0.532
Daci_0027
PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_4067 AMP-dependent synthetase and ligase.
 
     0.466
Daci_4533
PFAM: regulatory protein TetR; KEGG: asa:ASA_3759 transcriptional regulator, TetR family.
  
     0.408
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.