Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0040PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: eli:ELI_06420 glyoxalase family protein. (183 aa)    
Predicted Functional Partners:
Daci_0041
PFAM: NIPSNAP family containing protein; KEGG: rsh:Rsph17029_3880 NIPSNAP family containing protein.
       0.763
Daci_0042
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: swi:Swit_1570 short-chain dehydrogenase/reductase SDR.
  
   0.763
Daci_0038
PFAM: NADPH-dependent FMN reductase; KEGG: azo:azo2988 probable chromate reductase.
  
  
 0.571
Daci_0039
PFAM: conserved hypothetical protein; KEGG: bja:blr3080 hypothetical protein.
       0.527
Daci_0043
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bpe:BP2655 putative IclR-family regulatory protein.
       0.526
Daci_4795
KEGG: reu:Reut_B4501 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.521
Daci_3597
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_2077 maleylacetoacetate isomerase.
 
  
 0.516
Daci_2312
PFAM: nitroreductase; KEGG: ajs:Ajs_1048 nitroreductase.
 
    0.482
Daci_1126
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: aav:Aave_0742 fumarylacetoacetate (FAA) hydrolase.
 
   
 0.468
Daci_4604
PFAM: nitroreductase; KEGG: ajs:Ajs_2316 nitroreductase.
 
    0.467
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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