Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0048PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_0028 lysine exporter protein (LysE/YggA). (204 aa)    
Predicted Functional Partners:
Daci_0049
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ajs:Ajs_0029 cobyrinic acid a,c-diamide synthase.
  
    0.833
Daci_1667
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3544 lysine exporter protein (LysE/YggA).
  
    0.786
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
       0.653
mnmG
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
       0.646
Daci_0051
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: aav:Aave_0056 ParB-like partition protein; Belongs to the ParB family.
       0.534
Daci_0050
PFAM: protein of unknown function DUF1234; KEGG: aav:Aave_0055 protein of unknown function DUF1234.
       0.501
Daci_2268
PFAM: PsiF repeat protein; KEGG: ppu:PP_4851 phosphate starvation-inducible protein, PsiF precursor.
      
 0.404
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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