STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0055PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: ajs:Ajs_0035 oxidoreductase, molybdopterin binding. (417 aa)    
Predicted Functional Partners:
Daci_0054
KEGG: ajs:Ajs_0034 cytochrome c, class I.
 
 
 
 0.956
Daci_2499
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: rme:Rmet_2155 cytochrome c, class I.
   
 
 0.899
msrQ
Ferric reductase domain protein transmembrane component domain; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the r [...]
  
  
 0.727
Daci_2749
PFAM: cytochrome c class I; KEGG: aav:Aave_1504 cytochrome c, class I.
   
 
 0.684
Daci_1565
PFAM: cytochrome c class I; KEGG: ajs:Ajs_3583 cytochrome c, class I.
   
 
 0.679
Daci_0057
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ajs:Ajs_0037 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
   
 0.638
Daci_0056
Hypothetical protein.
       0.583
Daci_0925
PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: ajs:Ajs_3957 peptidase M24; Belongs to the peptidase M24B family.
      
 0.559
Daci_2121
TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: ajs:Ajs_1123 transthyretin; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
  
   0.523
Daci_4236
PFAM: cytochrome c class I; KEGG: bur:Bcep18194_B0408 cytochrome c, class I.
 
 
 
 0.500
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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