STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0076TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_B1918 benzoate-coenzyme A ligase. (518 aa)    
Predicted Functional Partners:
Daci_5094
PFAM: Aldehyde Dehydrogenase; KEGG: net:Neut_2587 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.930
amiE
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Catalyzes the hydrolysis of short-chain aliphatic amides to their corresponding organic acids with release of ammonia.
  
 
  0.905
Daci_2827
PFAM: Amidase; KEGG: reu:Reut_B4143 amidase.
   
 
  0.904
Daci_5308
PFAM: Amidase; KEGG: bra:BRADO4407 putative amidase; Belongs to the amidase family.
   
 
  0.904
aroK
Transcriptional regulator, XRE family with shikimate kinase activity; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
 
 
 0.882
Daci_0074
TIGRFAM: benzoyl-CoA-dihydrodiol lyase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vei:Veis_0732 enoyl-CoA hydratase/isomerase.
 
 
 0.869
Daci_0073
KEGG: pna:Pnap_2943 benzoyl-CoA oxygenase component B.
 
   
 0.826
Daci_4451
PFAM: protein of unknown function DUF453; KEGG: pna:Pnap_2033 protein of unknown function DUF453.
  
 
 0.817
Daci_4447
PFAM: amidohydrolase 2; KEGG: azo:azo2539 probable 2-pyrone-4,6-dicarboxylate hydrolase.
     
  0.800
Daci_0072
TIGRFAM: benzoyl-CoA oxygenase/reductase, BoxA protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: vei:Veis_0734 oxidoreductase FAD/NAD(P)-binding domain protein.
 
   
 0.787
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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