STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0084PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0044 uncharacterized domain 1. (157 aa)    
Predicted Functional Partners:
Daci_0082
PFAM: Domain of unknown function DUF1814; KEGG: xom:XOO_2997 hypothetical protein.
       0.518
Daci_0083
KEGG: xom:XOO_2998 hypothetical protein.
       0.518
Daci_0085
Succinate CoA transferase; KEGG: ajs:Ajs_0046 acetyl-CoA hydrolase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase.
       0.500
Daci_4829
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A3284 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.414
Daci_0026
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rfr:Rfer_4068 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.403
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.