STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0098Transcriptional regulator, MarR family; TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: bra:BRADO2596 putative homoprotocatechuate degradative operon repressor, transcriptional regulatory protein MarR family, HpcR-like. (166 aa)    
Predicted Functional Partners:
Daci_0102
PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: bbr:BB0738 5-carboxymethyl-2-hydroxymuconate delta-isomerase.
 
   
 0.863
Daci_0101
KEGG: bbr:BB0739 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase.
 
     0.818
Daci_0099
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; KEGG: rha:RHA1_ro10138 4-hydroxy-2-oxovalerate aldolase; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.742
Daci_1787
2-oxo-hepta-3-ene-1,7-dioic acid hydratase; KEGG: rha:RHA1_ro10137 2-oxopent-4-enoate hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase.
  
     0.682
Daci_3129
KEGG: pol:Bpro_0971 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase.
  
     0.645
Daci_0097
KEGG: ajs:Ajs_4160 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease.
       0.634
Daci_0103
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: swi:Swit_4311 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B.
 
   
 0.541
Daci_0100
TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: eba:ebA2996 succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.535
Daci_0106
TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: bbr:BB0736 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
     0.491
Daci_0107
KEGG: bcy:Bcer98_0972 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG2 subunit; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase.
 
     0.457
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.