STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0110PFAM: UspA domain protein; KEGG: ajs:Ajs_0074 UspA domain protein. (140 aa)    
Predicted Functional Partners:
Daci_2772
PFAM: UspA domain protein; KEGG: vei:Veis_1173 UspA domain protein.
 
     0.770
Daci_0111
PFAM: metallophosphoesterase; KEGG: aav:Aave_0135 metallophosphoesterase.
       0.730
Daci_0550
PFAM: UspA domain protein; KEGG: ajs:Ajs_3869 UspA domain protein.
  
     0.658
Daci_0112
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_0158 transcriptional regulator, LysR family.
       0.489
Daci_0918
KEGG: aav:Aave_4596 ribosomal subunit interface protein, putative.
 
  
 0.462
Daci_0109
PFAM: Fibronectin type III domain protein; KEGG: ava:Ava_4728 endonuclease/exonuclease/phosphatase.
       0.443
Daci_3359
TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: rpd:RPD_4087 methylated-DNA--protein-cysteine methyltransferase.
  
    0.425
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.410
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.